The Wagon-R you are talking about is new, so I am presuming that your friend might have got the music system and speakers fitted, there is a wooden tray(in which speakers are fitted) on which a rough grey/black cloth is pasted. The chemical used to paste that cloth on speaker's tray on exposure to sunlight gives out smell and sometimes causes extreme irritation to eyes. There is no problem to this solution, it goes away with time. Fuel leakage smell is of different sort which can be easily recognized, so since you haven't mentioned it, the problem must be what i mentioned.
The clutch wire needs adjustment along with the gear lever, not a big job, get it done from authorized service centre and your car will be ok.